Plots

API details

plot_losses

 plot_losses (local_losses=None, batch_losses=None, globe_losses=None,
              save=False, path='/home/solstice/projects/MIOFlow/imgs',
              file='losses.png')

plot_comparision

 plot_comparision (df, generated, trajectories, palette='viridis',
                   df_time_key='samples', save=False,
                   path='/home/solstice/projects/MIOFlow/imgs',
                   file='comparision.png', x='d1', y='d2', z='d3',
                   is_3d=False)

new_plot_comparisions

 new_plot_comparisions (df, generated, trajectories, palette='viridis',
                        df_time_key='samples', x='d1', y='d2', z='d3',
                        groups=None, save=False,
                        path='/home/solstice/projects/MIOFlow/imgs',
                        file='comparision.png', is_3d=False)

/home/solstice/anaconda3/envs/ml/lib/python3.9/site-packages/fastcore/docscrape.py:225: UserWarning: potentially wrong underline length... 
Returns: 
---------- in 
Notes:
    - first four arguments `genes`, `top_idxs`, `inverse`, and `colors` are output from `get_cell_indexes`...
  else: warn(msg)
/home/solstice/anaconda3/envs/ml/lib/python3.9/site-packages/fastcore/docscrape.py:225: UserWarning: Unknown section Arguments:
  else: warn(msg)
/home/solstice/anaconda3/envs/ml/lib/python3.9/site-packages/fastcore/docscrape.py:225: UserWarning: Unknown section Returns:
  else: warn(msg)

plot_gene_trends

 plot_gene_trends (genes, top_idxs, inverse, colors, samples=None,
                   groups=None, n_cols=None, n_rows=None, where='end',
                   start=0, top_n=None, cell_types=None,
                   use_cell_types=True, save:bool=False,
                   path:str='/home/solstice/projects/MIOFlow/imgs',
                   file:str='gene_trends.png')

Notes: - first four arguments genes, top_idxs, inverse, and colors are output from get_cell_indexes see that function’s docstring for more information.