Other methods

These methods requires additional packages that are installed with the development version of our package.

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RandWalkGeo

 RandWalkGeo (knn:int, anisotropy:int=0, decay:int=40, n_pca:int=40,
              tau:int=10, emb_dim:int=2, filter_method:str='exact',
              order:int=32, lap_type:str='normalized',
              log_normalize:bool=False, scale_factor:float=1,
              denoising:bool=False, n_ref:int=50, n_svd:int=50,
              graph_type:str='alpha')

HeatGeo with a random walk matrix instead of Heat kernel.

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DiffusionMap

 DiffusionMap (knn:int=0, decay:int=40, n_pca:int=40, tau:float=1,
               emb_dim:int=2, anisotropy:int=0, graph_type:str='alpha',
               **kwargs)

Diffusion Map embedding with different graph construction.

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ShortestPath

 ShortestPath (knn:int, anisotropy:int=0, decay:int=40, n_pca:int=40,
               graph_type:str='alpha', **kwargs)

Shortest path embedding with different graph construction.

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PhateBasic

 PhateBasic (knn:int, anisotropy:int=0, decay:int=40, n_pca:int=40,
             tau:Union[int,str]='auto', emb_dim:int=2)

Wrapper for PHATE.